test : 00927/00927-settings.txt model : xml, description simulation engine : JVode generated code : _00927_sbml_l3v1.java results : table with results plots : normal status : ok simulation time : 0.172 s.Parameters:
start: 0 duration: 2.0 steps: 50 variables: s, c absolute: 1.000000e-003 relative: 0.0001 amount: s concentration:Simulate via BioUML web edition:
The model contains one varying compartment called c and a speciess. The species is not directly affected by anything but the concentrationwill change as a result of the varying compartment size. However theamount of the species will remain constant.
The model contains one rule:
| Type | Variable | Formula |
| Rate | c | 0.5 · c |
The initial conditions are as follows:
| Value | Units | |
| Initial concentration of s | 2 | mole |
| Size of compartment c | 1 | litre |
Note: The test data for this model was generated from an analyticalsolution of the system of equations.
Normal plot
| time | s | c |
| 0.0 |
2.0 2.0 |
1.0 1.0 |
| 0.04 |
2.0 2.0 |
1.02020133999356 1.0202013402966053 |
| 0.08 |
2.0 2.0 |
1.04081077417141 1.0408107749068212 |
| 0.12 |
2.0 2.0 |
1.06183654654477 1.061836547457213 |
| 0.16 |
2.0 2.0 |
1.08328706767829 1.083287068472891 |
| 0.2 |
2.0 2.0 |
1.10517091802797 1.1051709189173458 |
| 0.24 |
2.0 2.0 |
1.12749685144512 1.127496852509111 |
| 0.28 |
2.0 2.0 |
1.15027379862888 1.1502737998610346 |
| 0.32 |
2.0 2.0 |
1.17351087068682 1.1735108721750473 |
| 0.36 |
2.0 2.0 |
1.19721736277491 1.197217364461242 |
| 0.4 |
2.0 2.0 |
1.2214027578154 1.2214027595014174 |
| 0.44 |
2.0 2.0 |
1.24607673028958 1.2460767319352464 |
| 0.48 |
2.0 2.0 |
1.27124914419992 1.2712491517198463 |
| 0.52 |
2.0 2.0 |
1.29693008520638 1.2969300880954866 |
| 0.56 |
2.0 2.0 |
1.32312980542248 1.323129813789652 |
| 0.6 |
2.0 2.0 |
1.34985880676137 1.3498588090729284 |
| 0.64 |
2.0 2.0 |
1.37712775672921 1.3771277659032515 |
| 0.68 |
2.0 2.0 |
1.40494759025932 1.4049475922096502 |
| 0.72 |
2.0 2.0 |
1.43332940639503 1.4333294162754193 |
| 0.76 |
2.0 2.0 |
1.46228458941423 1.462284591205455 |
| 0.8 |
2.0 2.0 |
1.49182468907942 1.4918246994645976 |
| 0.84 |
2.0 2.0 |
1.5219615555481 1.5219615574983851 |
| 0.88 |
2.0 2.0 |
1.55270720973858 1.552707220453013 |
| 0.92 |
2.0 2.0 |
1.58407398450634 1.5840739870001928 |
| 0.96 |
2.0 2.0 |
1.61607439341357 1.6160744042623745 |
| 1.0 |
2.0 2.0 |
1.64872126947302 1.648721272834408 |
| 1.04 |
2.0 2.0 |
1.68202764112964 1.6820276519011534 |
| 1.08 |
2.0 2.0 |
1.71600685818762 1.7160068644575686 |
| 1.12 |
2.0 2.0 |
1.75067247271722 1.750672502641076 |
| 1.16 |
2.0 2.0 |
1.78603842796424 1.7860384331686385 |
| 1.2 |
2.0 2.0 |
1.82211877873774 1.822118802884133 |
| 1.24 |
2.0 2.0 |
1.85892802289531 1.858928044416888 |
| 1.28 |
2.0 2.0 |
1.89648087369926 1.8964808819545134 |
| 1.32 |
2.0 2.0 |
1.93479230407744 1.934792337132724 |
| 1.36 |
2.0 2.0 |
1.97387773009405 1.9738777350443613 |
| 1.4 |
2.0 2.0 |
2.01375268231869 2.013752710369756 |
| 1.44 |
2.0 2.0 |
2.05443319116403 2.0544332136308023 |
| 1.48 |
2.0 2.0 |
2.09593550689326 2.095935517571308 |
| 1.52 |
2.0 2.0 |
2.1382761872849 2.138276223666267 |
| 1.56 |
2.0 2.0 |
2.18147226401718 2.1814722687626884 |
| 1.6 |
2.0 2.0 |
2.2255408994389 2.2255409318559627 |
| 1.64 |
2.0 2.0 |
2.27049981766746 2.270499840998345 |
| 1.68 |
2.0 2.0 |
2.31636696674595 2.3163669803516753 |
| 1.72 |
2.0 2.0 |
2.36316065747776 2.36316069738336 |
| 1.76 |
2.0 2.0 |
2.41089970555073 2.4108997102042236 |
| 1.8 |
2.0 2.0 |
2.45960307777154 2.459603115056007 |
| 1.84 |
2.0 2.0 |
2.50929036985628 2.5092903939501228 |
| 1.88 |
2.0 2.0 |
2.5599814132851 2.5599814224607154 |
| 1.92 |
2.0 2.0 |
2.61169647051086 2.611696477675158 |
| 1.96 |
2.0 2.0 |
2.66445623295895 2.6644562463051504 |
| 2.0 |
2.0 2.0 |
2.71828182847037 2.718281832961688 |
Legend:
each cell contains two values:
- value that should be obtained accrding to CSV file;
- value that were approximated for corresponding point by BioUML workbench simulation engine.
Color indicates difference between values:
- simulation results satisfy SBML passing criterion
- relative error (> SBML passing criterion allows and <50%)
- simulation results don't satisfy SBML passing criterion and significantly differs (>50%)